PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 658aa    MW: 75283.9 Da    PI: 7.436
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.1e-08554600247
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+e+++d v+   +    Wk   + ++  +t+++++s+++++
   XP_016515320.1 554 LSWTAEEEERFKDMVRSSSTSnnKWKNSKKLLP-SKTRNMLVSYYFNV 600
                      68**************99988999***999999.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010147.6E-1035127No hitNo description
PROSITE profilePS5101118.01938131IPR001606ARID DNA-binding domain
SMARTSM005011.4E-1439132IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.602.0E-1441132IPR001606ARID DNA-binding domain
SuperFamilySSF467744.06E-1843132IPR001606ARID DNA-binding domain
PfamPF013885.8E-1160127IPR001606ARID DNA-binding domain
PROSITE profilePS511569.67454602IPR000949ELM2 domain
CDDcd001672.53E-4555601No hitNo description
PROSITE profilePS500906.005555601IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-4555600IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MEAWSSLNDE SQVYKGNESG SGINLTVEVN GIDGCSKNRL KSLFDQVLSV FLSEVTEKKC  60
VRPLPVMTGS GKPLDLFKLY WIVRKIGGYD RVSSKNLWGF IAEHCGLDVG AVAFVKLVYV  120
KYLAEFDHWL RQLCKEGNLE KREGGVVRRL DLLSKELETR FRRLLLRRCQ KKKDANLLPS  180
KNGQVDFEML TTESVNKTND YTTRRSFNAE NRNGNLYNGD ERSVSKIDDD YVFLASAEGI  240
VEKVLYKAPE KSNNEYDDDE KFFARDIKNK VTSNGEVIQR AASAMSVIEN VFDSRKRKRE  300
SSCFSGMLNW INHAAKHSND PEIGEVPESS KWKGHTSNEF WFQVLLVKEA LLKRRHTDTN  360
AEESNPQQKK QRMHPFMYEE RLNNQPAEKL RCSKRIPVSP KHVPCPCCNS CSTSQNKAST  420
HQKEEEQDTG PDLTSIEVSV TEKTDDLGDQ QTHPEVSVGP LHQAEVPEWS GVISESDSKW  480
LGTRMWPPEV ETTKSLVELD PIGEGRRSSC GCRFPQSVEC IRFHIAEKRF KLKLELGPLF  540
NRWRFDRMGE EISLSWTAEE EERFKDMVRS SSTSNNKWKN SKKLLPSKTR NMLVSYYFNV  600
FLIRRRSYQN RVTPKELDSD DDEIELGSVG DSFGNIAVHV PSSRSLTCVE NKVCSDLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161172RRLLLRRCQKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6171812e-98AJ617181.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np407.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515315.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1
RefseqXP_016515316.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1
RefseqXP_016515317.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1
RefseqXP_016515318.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1
RefseqXP_016515319.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1
RefseqXP_016515320.10.0PREDICTED: AT-rich interactive domain-containing protein 2-like isoform X1
TrEMBLA0A0V0IR500.0A0A0V0IR50_SOLCH; Putative AT-rich interactive domain-containing protein 2-like
STRINGPGSC0003DMT4000317930.0(Solanum tuberosum)